用yum安装基本软件

生信喵

1. yum install -y gcc*
   
2. yum install -y zlib*
   
3. yum install -y glibc*
   
4. yum install -y boost-* --skip-broken
   
5. yum install -y lib* --skip-broken
   
6. yum install -y compat-*
   
7. yum install -y java-*  --skip-broken
   
8. yum install -y pip*
   
9. yum install -y python2-pip.noarch python34-pip.noarch
   
10. yum install -y cmake3.x86_64 cmake.x86_64
    
11. yum install -y ncurses-devel.i686 ncurses-devel.x86_64
    
12. yum install -y root.x86_64
    
13. yum install -y libcurl-devel.i686 libcurl-devel.x86_64 libcurl.i686 libcurl.x86_64
    
14. yum install -y libXScrnSaver.i686 libXScrnSaver.x86_64
    
15. yum  install -y argtable.x86_64  argtable-devel.x86_64
    
16. yum install -y openssl-devel
    
17. yum install -y libstdc++.i686 libstdc++.x86_64 libstdc++-devel.i686 libstdc++-devel.x86_64 libstdc++-static.i686 libstdc++-static.x86_64 compat-libstdc++-33.i686 compat-libstdc++-33.x86_64
    
18. yum install -y tbb-devel.x86_64
    
19. yum install -y gsl-devel.i686   gsl-devel.x86_64 gsl.i686 gsl.x86_64
    
20. yum install -y perl-Sys-SigAction.noarch
    
21. yum install -y build-essentials
    
22. yum install -y swig-doc.noarch
    
23. yum install -y swig.x86_64
    
24. yum install -y libcurl-devel.i686
    
25. yum install -y libcurl-devel.x86_64
    
26. yum install -y libcurl.i686
    
27. yum install -y libcurl.x86_64
    
28. yum install -y glibc-devel.i686
    
29. yum install -y glibc-devel.x86_64
    
30. yum install -y libXtst-devel.i686
    
31. yum install -y libXtst-devel.x86_64
    
32. yum install -y openssl-devel.i686
    
33. yum install -y openssl-devel.x86_64
    
34. yum install -y xmlsec1.x86_64
    
35. yum install -y xmlsec1.i686
    
36. yum install -y xmlsec1-nss.x86_64
    
37. yum install -y xmlsec1-nss.i686
    
38. yum install -y xmlsec1-openssl.x86_64
    
39. yum install -y xmlsec1-openssl.i686
    
40. yum install -y xmlsec1-openssl-devel.x86_64
    
41. yum install -y libquadmath.i686
    
42. yum install -y libquadmath.x86_64
    
43. yum install -y libquadmath-devel.i686
    
44. yum install -y libquadmath-devel.x86_64
    
45. yum install -y libstdc++-static
    
46. yum install -y pandoc.x86_64
    
47. yum install -y pcre2.x86_64
    
48. yum install -y pcre.x86_64
    
49. yum install -y pcre2.x86_64
    
50. yum install -y ImageMagick* --skip-broken

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安装python模块

1. yum install -y python3-* --skip-broken

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安装perl模块

1. yum install -y perl-* --skip-broken

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perl这一块的安装包找不到，可以用conda来安装，还有cpanm来安装

1. (base) xiehs 09:45:56 ~
   
2. $ cpanm XML::Parser
   
3. --> Working on XML::Parser
   
4. Fetching http://www.cpan.org/authors/id/T/TO/TODDR/XML-Parser-2.46.tar.gz ... OK
   
5. Configuring XML-Parser-2.46 ... OK
   
6. Building and testing XML-Parser-2.46 ... OK
   
7. Successfully installed XML-Parser-2.46 (upgraded from 2.41)
   
8. 1 distribution installed

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其他应用

1. yum install -y dnf
   
2. yum install -y git
   
3. yum install -y tree
   
4. yum install -y htop
   
5. yum install -y screen
   
6. yum install -y lftp
   
7. yum install -y iftop
   
8. yum install -y tmux
   
9. yum install -y podman-docker.noarch
   
10. yum install -y pbzip2 nethogs

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检查更新

1. yum check-update

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更新

1. yum update

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